How much does a train ticket from San Diego to Flagstaff cost?

The average train ticket price from San Diego to Flagstaff is $125. The best way to find train tickets from San Diego to Flagstaff is to book your tickets as early as possible. Prices tend to rise as your travel date approaches, so book in advance to secure the best prices!

How long is the train trip from San Diego to Flagstaff?

A train trip between San Diego and Flagstaff is around 13h 50m, although the fastest train will take about 13h 41m. This is the time it takes to travel the 354 miles that separates the two cities.

How many daily trains are there between San Diego and Flagstaff?

The number of trains from San Diego to Flagstaff can differ depending on the day of the week. On average, there are 2. Some trains are direct while others have layovers. Simplify your train trip from San Diego to Flagstaff by comparing and selecting the train that fits your travel style and budget on Busbud.

Which train companies travel from San Diego to Flagstaff?

When taking the train from San Diego to Flagstaff, you can travel comfortably and safely with Amtrak.

Train San Diego to Flagstaff from $103 | Refundable Tickets

Previously seen trips

Next departures for San Diego to Flagstaff on November 20
Vehicle type	Departure time	Departure location	Trip duration	Arrival time	Arrival location	Recommended
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	No tags
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	No tags
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	No tags
Train	2:10pm	Old Town San Diego	13h 41m	4:51am	Amtrak Station	No tags
Train	2:01pm	Santa Fe Depot	13h 50m	4:51am	Amtrak Station	No tags

Compare 2 ways to go from San Diego to Flagstaff

We recommend taking the train

Among the sustainable travel choices, the train stands out as the good way to reach Flagstaff. The journey takes about 13 hours 50 minutes and with fares starting at just $97, it presents an excellent value for a comfortable ride.

2train per day

13h 50mAverage Duration

360 milesDistance

53kgCO₂ emissions

	Average Price	Average Duration	CO₂ emissions	Actions
Bus	Average Price$87 - $234	Average Duration20h 4m	CO₂ emissions 14kg CO₂e
Train	Average Price$97 - $163	Average Duration13h 50m	CO₂ emissions 53kg CO₂e

Train Companies

Amtrak

4/55,594 reviews

Staff4.7

Timeliness3.8

Cleanliness4.6

Wifi3.6

Based on 5594 reviews, the company was rated 4.1 stars on Busbud. Travelers were especially satisfied with the seats and the ticket access but often complained with the wifi. Amtrak ticket prices on this trip start at $97

Train and bus companies in US:Amtrak, Trenitalia, Renfe, VIA Rail Canada, Amtrak Acela, NS Nederlandse Spoorwegen, Iryo

Frequently asked questions about traveling from San Diego, CA, US to Flagstaff, US by train

How much does a train ticket from San Diego to Flagstaff cost?
How long is the train trip from San Diego to Flagstaff?
How many daily trains are there between San Diego and Flagstaff?
Which train companies travel from San Diego to Flagstaff?

Find cheapest prices for trains

Price is for a one-way ticket for one passenger and based on past searches.

Best price found

11/18

$119

11/19

$103

Today

$103

11/21

$137

11/22

No data

11/23

$119

11/24

No data

11/25

$137

The cheapest trip from San Diego, CA, US to Flagstaff, US was searched and found on Nov 19, 2025 with a price of $103

To save money and be sure you have the best seat, it's a good idea to buy your train tickets from San Diego, CA, US to Flagstaff, US, as early as possible.

You can expect to pay from $103 to $542 for a train ticket from San Diego, CA, US to Flagstaff, US based on the last 2 days. You can expect to find the cheapest price for the trip at $119 which is on 2025-11-23.

What's the cheapest way to go from San Diego, CA, US to Flagstaff, US?

The train is the cheapest travel choice for this destination

Vehicle Type	Travel Time	Avg Price	Daily Departures
Vehicle TypeBus	Travel Time20h 4m	Avg Price$132	Daily Departures9
Vehicle TypeTrain	Travel Time13h 50m	Avg Price$125	Daily Departures2

The best way to travel between San Diego, CA, US and Flagstaff, US is by train. By choosing the train, you'll get to save some money as you travel to your destination, as ticket prices cost $125 on average. If you're on a budget, you'll find cheap tickets from $97. If you're looking for the fastest way to get to Flagstaff, US, choose the train, as it will take you from San Diego, CA, US to Flagstaff, US in about 13h 50m - that's the fastest way to get there!